| Standings | P | W | D | L | GD | PTS | |
|---|---|---|---|---|---|---|---|
| 1 | FC Zlin | 29 | 20 | 8 | 1 | 30 | 68 |
| 2 | MFK Chrudim | 29 | 15 | 8 | 6 | 19 | 53 |
| 3 | Vyskov | 29 | 11 | 10 | 8 | 7 | 43 |
| 4 | FC Silon Taborsko | 29 | 11 | 8 | 10 | 5 | 41 |
| 5 | Sparta Praha II | 29 | 10 | 10 | 9 | 3 | 40 |
| 6 | Lisen | 29 | 9 | 12 | 8 | -3 | 39 |
| 7 | FC Zbrojovka Brno | 29 | 9 | 11 | 9 | -2 | 38 |
| 8 | FC Vlasim | 29 | 8 | 13 | 8 | 2 | 37 |
| 9 | SK Prostejov | 29 | 9 | 10 | 10 | -9 | 37 |
| 10 | Zizkov | 29 | 10 | 6 | 13 | -2 | 36 |
| 11 | Vysocina Jihlava | 29 | 8 | 12 | 9 | -4 | 36 |
| 12 | Opava | 29 | 9 | 9 | 11 | -8 | 36 |
| 13 | Slavia Prague II | 29 | 8 | 10 | 11 | 3 | 34 |
| 14 | FK Varnsdorf | 29 | 8 | 8 | 13 | -4 | 32 |
| 15 | Baník Ostrava II | 29 | 8 | 7 | 14 | -12 | 31 |
| 16 | Sigma Olomouc II | 29 | 5 | 6 | 18 | -25 | 21 |
- Czech Republic - Czech Liga
- Qualification for promotion play-offs
- Czech Republic - MSFL